Protein (Surface Antigen Psaa)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Surface Antigen Psaa)
  Conformer 1
(PDB) 		1psz (A)
  Conformer 2
(PDB) 		3zka (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 195 1.08   34 - 186   208 - 210   214 - 229   232 - 232   278 - 299
2 79 0.62   187 - 207   211 - 213   230 - 231   233 - 277   300 - 307

Sequence


           ________________________________________________________________________________________________________________________ 
 1psz(A) : KKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLN 
         :                                                                                                                          
 3zka(B) : ********KLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________186__________________207___213________224_______________________________________ 
 1psz(A) : LENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMK 
         :                                                                                                                          
 3zka(B) : LENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMK 
           ________________________________________186__________________207___213________224_______________________________________ 

           ___________277___________________299__________                                                                           
 1psz(A) : TVSQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGLAK                                                                           
         :                                                                                                                          
 3zka(B) : TVSQDTNIPIYAQIFTNSIAEQGKEGDSYYSMMKYNLDKIAEGLAK                                                                           
           ___________277___________________299__________                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.1
Translation
(A) 		0.1
Closure
(%) 		99.3
Bending Residues
( green ) 		  186 - 187
  207 - 208
  210 - 211
  213 - 214
  224 - 233
  277 - 278
  299 - 300
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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