Putative Abc Transporter, Periplasmic Binding Protein, Amino Acid

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Abc Transporter, Periplasmic Binding Protein, Amino Acid
  Conformer 1
(PDB) 		2yln (A)
  Conformer 2
(PDB) 		3zsf (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 141 0.61   41 - 136   229 - 273
2 92 1.01   137 - 228

Sequence


           _________________________________________________________________________________________________135____________________ 
 2yln(A) : AISGSLIERINNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADIK 
         :                                                                                                                          
 3zsf(A) : ***GSLIERINNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADIK 
           _________________________________________________________________________________________________135____________________ 

           ___________________________________________________________________225__________________________________________________ 
 2yln(A) : GVKTAQSLTSNYGEKAKAAGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ 
         :                                                                                                                          
 3zsf(A) : GVKTAQSLTSNYGEKAKAAGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ 
           ___________________________________________________________________225__________________________________________________ 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		60.1
Translation
(A) 		-1.1
Closure
(%) 		99.9
Bending Residues
( green ) 		  135 - 137
  225 - 230
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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