Putative Iron Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Iron Binding Protein
  Conformer 1
(PDB) 		1y9u (A)
  Conformer 2
(PDB) 		2owt (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 170 0.6   105 - 238   272 - 276   285 - 293   296 - 321
2 140 0.97   8 - 104   239 - 271   277 - 284   294 - 295

Sequence


           _________________________________________________________________________________________________104____________________ 
 1y9u(A) : *DEVSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNLIDLVNGGVTQKIQSQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKLDSFRYGD 
         :                                                                                                                          
 2owt(A) : SDEVSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNLIDLVNGGVTQKIQSQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKLDSFRYGD 
           _________________________________________________________________________________________________104____________________ 

           ___________________________________________________________________________________________________________238__________ 
 1y9u(A) : LADPKWKGKVCIRSGQHPYNTALVAAMIAHDGAEATEKWLRGVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAEPGTDARKWGDAIKVVRPTFAgGTHVNISGAAVAAHA 
         :                                                                                                                          
 2owt(A) : LADPKWKGKVCIRSGQHPYNTALVAAMIAHDGAEATEKWLRGVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAEPGTDARKWGDAIKVVRPTFAgGTHVNISGAAVAAHA 
           ___________________________________________________________________________________________________________238__________ 

           _________________268_____________284______293______________________________                                              
 1y9u(A) : PNKANAVKLLEYLVSEPAQTLYAQANYEYPVRAGVKLDAVVASFGPLKVDTLPVAEIAKYRKQASELVDKVGFDN                                              
         :                                                                                                                          
 2owt(A) : PNKANAVKLLEYLVSEPAQTLYAQANYEYPVRAGVKLDAVVASFGPLKVDTLPVAEIAKYRKQASELVDKVGFDN                                              
           _________________268_____________284______293______________________________                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		24.6
Translation
(A) 		-0.6
Closure
(%) 		97.3
Bending Residues
( green ) 		  104 - 105
  238 - 240
  268 - 277
  284 - 285
  293 - 296
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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