Response Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Response Regulator
  Conformer 1
(PDB) 		4zmr (A)
  Conformer 2
(PDB) 		4zms (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 131 0.13   -5 - 81   86 - 129
2 72 0.24   82 - 85   130 - 197

Sequence


           _______________________________________________________________________________________81__85___________________________ 
 4zmr(A) : GLVPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQ 
         :                                                                                                                          
 4zms(A) : GLVPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQ 
           _______________________________________________________________________________________81__85___________________________ 

           __________125__________________________________________________________________________                                  
 4zmr(A) : TLHTVLEGRKEYSPELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL                                  
         :                                                                                                                          
 4zms(A) : TLHTVLEGRKEYSPELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL                                  
           __________125__________________________________________________________________________                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.4
Translation
(A) 		0.0
Closure
(%) 		74.5
Bending Residues
( green ) 		  81 - 82
  85 - 86
  125 - 130
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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