Ribose-5-Phosphate Isomerase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribose-5-Phosphate Isomerase A
  Conformer 1
(PDB) 		3l7o (A)
  Conformer 2
(PDB) 		3l7o (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 130 0.41   80 - 106   113 - 211   220 - 223
2 87 0.79   4 - 79   107 - 112   212 - 219

Sequence


           ____________________________________________________________________________79_____________________103______112_________ 
 3l7o(A) : EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDES 
         :                                                                                                                          
 3l7o(B) : EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDES 
           ____________________________________________________________________________79_____________________103______112_________ 

           _______________________________________________________________________________________211_____219______                 
 3l7o(A) : KMVDTLGAFRLPVEVVQYGAERLFREFEKKGYKPSFREYDGVRFVTDMKNFIIDLDLGSIPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAG---VRILEANK                 
         :                                                                                                                          
 3l7o(B) : KMVDTLGAFRLPVEVVQYGAERLFREFEKKGYKPSFREYDGVRFVTDMKNFIIDLDLGSIPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRILEANK                 
           _______________________________________________________________________________________211_____219______                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.3
Translation
(A) 		0.7
Closure
(%) 		3.4
Bending Residues
( green ) 		  79 - 80
  103 - 107
  112 - 118
  211 - 212
  219 - 220
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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