RNA Polymerase Sigma-70 Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name RNA Polymerase Sigma-70 Subunit
  Conformer 1
(PDB) 		1iw7 (F)
  Conformer 2
(PDB) 		1iw7 (P)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 233 0.82   182 - 419
2 104 0.06   78 - 181

Sequence


           _________________________________________________________________________________________________________181____________ 
 1iw7(F) : KISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLR 
         :                                                                                                                          
 1iw7(P) : KISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLR 
           _________________________________________________________________________________________________________181____________ 

           ________________________________________________________________________________________________________________________ 
 1iw7(F) : LVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQE 
         :                                                                                                                          
 1iw7(P) : LVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQE 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________                
 1iw7(F) : PVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGeEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFLD                
         :                                                                                                                          
 1iw7(P) : PVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGeEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFLD                
           _________________________________________________________________________________________________________                

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.5
Translation
(A) 		0.4
Closure
(%) 		5.3
Bending Residues
( green ) 		  181 - 187
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download