Saccharopine Dehydrogenase [Nad+, L-Lysine- Forming

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Saccharopine Dehydrogenase [Nad+, L-Lysine- Forming
  Conformer 1
(PDB) 		2q99 (A)
  Conformer 2
(PDB) 		2qrj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 186 0.39   134 - 170   177 - 326
2 172 0.44   5 - 133   171 - 176   327 - 365

Sequence


           ________________________________________________________________________________________________________________________ 
 2q99(A) : AAVTLHLRAETKPLEARAALTPTTVKKLIAKGFKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPRDRIIIGLKE-pETDTFPLVHEHIQFAHCYKDQAGWQNVL-rFIKGHGTLYDL 
         :                                                                                                                          
 2qrj(A) : *AVTLHLRAETKPLEARAALTPTTVKKLIAKGFKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPRDRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDL 
           ________________________________________________________________________________________________________________________ 

           _________133________________________________168_________________________________________________________________________ 
 2q99(A) : EFLENDQGRRVAAFGFYAGFAGAALGVRDWAFKQTHSDDEDLPAVSPYPNEKALVKDVTKDYKEALATGARKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPFDEIP 
         :                                                                                                                          
 2qrj(A) : EFLENDQGRRVAAFGFYAGFAGAALGVRDWAFKQTHSDDEDLPAVSPYPNEKALVKDVTKDYKEALATGARKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPFDEIP 
           _________133________________________________168_________________________________________________________________________ 

           _______________________________________________________________________________323______________________________________ 
 2q99(A) : QADIFINCIYLSKPIAPFTN-eKLNNPNRRLRTVVDVSADTTNPHNPIPIYTVATVFNKPTVLVPTTAGPKLSVISIDHLPSLLPREASEFFSHDLLPSLELLPQRKTAPVWVRAKKLFD 
         :                                                                                                                          
 2qrj(A) : QADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVSADTTNPHNPIPIYTVATVFNKPTVLVPTTAGPKLSVISIDHLPSLLPREASEFFSHDLLPSLELLPQRKTAPVWVRAKKLFD 
           _______________________________________________________________________________323______________________________________ 

           ____________                                                                                                             
 2q99(A) : RHCARVKRSSRL                                                                                                             
         :                                                                                                                          
 2qrj(A) : RHCARV******                                                                                                             
           ____________                                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.9
Translation
(A) 		0.3
Closure
(%) 		70.5
Bending Residues
( green ) 		  133 - 136
  168 - 179
  323 - 327
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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