Smoothened,soluble Cytochrome B562,smoothened

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Smoothened,soluble Cytochrome B562,smoothened
  Conformer 1
(PDB) 		6d32 (A)
  Conformer 2
(PDB) 		5l7d (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 332 2.12   165 - 399   420 - 523
2 124 0.73   38 - 161
3 110 1.42   400 - 419

Sequence


           ________________________________________________________________________________________________________________________ 
 6d32(A) : *****KCKKTTTCEPLKYNICLGSVLPYALTSTVLAEDSSSQDEVHDKLSLWSGLRNAPRCWDAIRPLLCAVYMPKCEGGKVELPSQGLCQTTRVPCAIVARERGWPDFLKCTTDYFPEG 
         :                                                                                                                          
 5l7d(A) : PPPLSHCGRAAPCEPLRYNVCLGSVLPYGATSTLLAGDSDSQEEAHGKLVLWSGLRNAPRCWAVIQPLLCAVYMPKCENDRVELPSRTLCQATRGPCAIVERERGWPDFLRCTPDRFPEG 
           ________________________________________________________________________________________________________________________ 

           ______159_______________________________________________________________________________________________________________ 
 6d32(A) : CPNEVQNIKFNSAGQCEAPLVRTDNPKSWYEDVEGCGIQCQNPLFTNKEHREMHIYIAIFSSVTIFCTFFTLATFLVDWKNSNRYPAVILFYVNACFFAGSIGWLAQFMDGARDEIVCRG 
         :                                                                                                                          
 5l7d(A) : CTNEVQNIKFNSSGQCEVPLVRTDNPKSWYEDVEGCGIQCQNPLFTEAEHQDMHSYIAAFGAVTGLCTLFTLATFVADWRNSNRYPAVILFYVNACFFVGSIGWLAQFMDGARREIVCRA 
           ______186_______________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6d32(A) : DGTMRLGEPTSSETLSCVIIFIIVYYSMMSGVIWFVMLTYAWHTSFKAl---SGKTSYFHLITWSIPFVLTVAILAVAQVDGDSVSGICFVGYKNYHYRAGFVLAPIGLVLIGGGYFLIR 
         :                                                                                                                          
 5l7d(A) : DGTMRLGEPTSNETLSCVIIFVIVYYALMAGFVWFVVLTYAWHTSFKALqPLSGKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICFVGYKNYRYRAGFVLAPIGLVLIVGGYFLIR 
           ________________________________________________________________________________________________________________________ 

           __399_________________________________________________________________________________________________________________41 
 6d32(A) : GVMTLFSARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQK------eMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLSKI 
         :                                                                                                                          
 5l7d(A) : GVMTLFSARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPsPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLSKI 
           __426_________________________________________________________________________________________________________________44 

           9___________________________________________________________________________________________________________             
 6d32(A) : NETMLRLGIFGFLAFGFVLITFGCHFYDFFNQAEWERSFREYVLCEANVAIAEQTNKPIPECYIKNRPSLLVEKINLFAMFGTGISMSTWVWTKATIIIWKRAWCRI*             
         :                                                                                                                          
 5l7d(A) : NETMLRLGIFGFLAFGFVLITFSCHFYDFFNQAEWERSFRDYVLCQANVTIGLPTKQPIPDCEIKNRPSLLVEKINLFAMFGTGIAMSTWVWTKATLLIWRRTWCRLT             
           6___________________________________________________________________________________________________________             

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		122.0
Translation
(A) 		-2.0
Closure
(%) 		65.0
Bending Residues
( green ) 		  159 - 166
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		42.1
Translation
(A) 		-1.3
Closure
(%) 		57.6
Bending Residues
( green ) 		  399 - 401
  419 - 431
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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