Succinyl-Coa Ligase [Gdp-Forming] Beta-Chain, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Succinyl-Coa Ligase [Gdp-Forming] Beta-Chain, Mitochondrial
  Conformer 1
(PDB) 		2fpp (B)
  Conformer 2
(PDB) 		2fp4 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 254 0.64   5 - 5   8 - 10   12 - 12   14 - 15   17 - 18   109 - 326   345 - 356   377 - 391
2 97 0.37   3 - 4   6 - 7   11 - 11   13 - 13   16 - 16   19 - 108
3 38 0.75   327 - 344   357 - 376

Sequence


           ___4____10_______________________________________________________________________________________________108____________ 
 2fpp(B) : MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 
         :                                                                                                                          
 2fp4(B) : MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 
           ___4____10_______________________________________________________________________________________________108____________ 

           ________________________________________________________________________________________________________________________ 
 2fpp(B) : MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 
         :                                                                                                                          
 2fp4(B) : MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________326_______________344_________356____ 
 2fpp(B) : DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTN 
         :                                                                                                                          
 2fp4(B) : DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTN 
           ___________________________________________________________________________________326_______________344_________356____ 

           _____________376_________________                                                                                        
 2fpp(B) : VHEAQNILTNSGLPITSAVDLEDAAKKAVASVT                                                                                        
         :                                                                                                                          
 2fp4(B) : VHEAQNILTNSGLPITSAVDLEDAAKKAVASVT                                                                                        
           _____________376_________________                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.0
Translation
(A) 		0.3
Closure
(%) 		79.3
Bending Residues
( green ) 		  4 - 8
  10 - 19
  108 - 109
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		11.2
Translation
(A) 		-0.3
Closure
(%) 		78.0
Bending Residues
( green ) 		  326 - 327
  344 - 345
  356 - 359
  376 - 377
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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