DynDom - Protein Domain Motions

Sucrose Hydrolase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Sucrose Hydrolase
Conformer 1 (PDB)	3cze (A)
Conformer 2 (PDB)	3czk (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	344	0.48	81 - 128 145 - 146 149 - 156 162 - 163 171 - 172 320 - 332 334 - 342 346 - 635
2	239	0.89	8 - 80 129 - 144 147 - 148 157 - 161 164 - 170 173 - 318 333 - 333 343 - 345

Sequence

`_________________________________________________________________________80_____________________________________________` `3cze(A) : IDPPALRAAFAGPL----aEVLLSRYDQHASRLLDALHALYGQRADYASWLAQWLGEVGDIARQRPQALQTLDSTRHAGWFGQPH-lGYSAYADRFAGTLQGVAERVPYLQELGVRYLHL` `:` `3czk(A) : IDPPALRAAFAGPLDPQHAEVLLSRYDQHASRLLDALHALYGQRADYASWLAQWLGEVGDIARQRPQALQTLDSTRHAGWFGQPHMLGYSAYADRFAGTLQGVAERVPYLQELGVRYLHL` `_________________________________________________________________________80_____________________________________________` `128_____________144_________156__161______170___________________________________________________________________________` `3cze(A) : LPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQV------gNFTWVDDTAQW-wTTFY` `:` `3czk(A) : LPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQVFPHTAPGNFTWVDDTAQWMWTTFY` `128_____________144_________156__161______170___________________________________________________________________________` `______________________________________________________________________318__323________________342_______________________` `3cze(A) : PYQWDLNWSNPAVFGD-aLA-lRLANLGVEAFRLDSTAYLWKRIGTDC-nQSEAHTLLVALRAVTDIVAPAVV-kAEAIVP-tQLPPYFGSGVDEGHECHLAYHSTL-aAGWSALALQRG` `:` `3czk(A) : PYQWDLNWSNPAVFGDMALAMLRLANLGVEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVAPAVVMKAQAIVPMTQLPPYFGSGVDEGHECHLAYHSTLMAAGWSALALQRG` `______________________________________________________________________318__323________________342_______________________` `________________________________________________________________________________________________________________________` `3cze(A) : DILHNVIAHSPPLPRHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESF--vHGTNG-aAALAGIQAAQEAGDAAALAVAVDRLVLLYAIALA-pGVPL` `:` `3czk(A) : DILHNVIAHSPPLPRHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQgVHGTNGMAAALAGIQAAQEAGDAAALAVAVDRLVLLYAIALAMPGVPL` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `3cze(A) : IY-gDELA-vNDPGYRDDPHRQHEGRWLHRPA-dWQLAAQRHDAKSLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSDQLLDVELAAIGVDGWTL--` `:` `3czk(A) : IYMGDELAMVNDPGYRDDPHRQHEGRWLHRPAMDWQLAAQRHDAKSLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSDQLLDVELAAIGVDGWTLLr` `________________________________________________________________________________________________________________________` `__________________` `3cze(A) :` `---sIVLPPYGVRWLQR*` `:` `3czk(A) :` `GDGSIVLPPYGVRWLQRG` `__________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	6.6
Translation (A)	0.1
Closure (%)	89.1
Bending Residues ( green )	80 - 82 128 - 129 144 - 149 156 - 157 161 - 165 170 - 173 318 - 320 323 - 334 342 - 343 345 - 346
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

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