Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulator (Ntrc Family)
  Conformer 1
(PDB) 		1ny5 (A)
  Conformer 2
(PDB) 		1ny6 (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 134 0.99   160 - 165   167 - 167   172 - 172   174 - 174   177 - 179   183 - 183   185 - 305
2 103 1.06   143 - 159   166 - 166   168 - 171   173 - 173   175 - 176   180 - 182   184 - 184   306 - 379

Sequence


           ________________________________________________________________________________________________________________________ 
 1ny5(A) : MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 
         :                                                                                                                          
 1ny6(H) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ____________________________________159___165___171_____179_____________________________________________________________ 
 1ny5(A) : LRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI 
         :                                                                                                                          
 1ny6(H) : *****************EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI 
           ____________________________________159___165___171_____179_____________________________________________________________ 

           ______________________________________________________________305_______________________________________________________ 
 1ny5(A) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK 
         :                                                                                                                          
 1ny6(H) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK 
           ______________________________________________________________305_______________________________________________________ 

           ________________________                                                                                                 
 1ny5(A) : NVIERAVLFSEGKFIDRGELSCLV                                                                                                 
         :                                                                                                                          
 1ny6(H) : NVIERAVLFSEGKFIDRGELSC**                                                                                                 
           ________________________                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.9
Translation
(A) 		0.4
Closure
(%) 		80.1
Bending Residues
( green ) 		  159 - 160
  165 - 168
  171 - 177
  179 - 180
  182 - 185
  305 - 306
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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