Tryptophan Synthase Beta Chain 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophan Synthase Beta Chain 1
  Conformer 1
(PDB) 		6am8 (C)
  Conformer 2
(PDB) 		5e0k (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 287 0.45   3 - 28   33 - 89   118 - 120   182 - 383
2 93 0.7   29 - 32   90 - 117   121 - 181

Sequence


           __________________________28___________________________________________________________89_________________________117___ 
 6am8(C) : MWFGEFGGQYVPETLVGPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKVYLKREDLVHGGAHKTNNAIGQALLAKLMGKTRLIAETGAGQHGVATAMAGAL 
         :                                                                                                                          
 5e0k(B) : MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAH-tNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGAL 
           __________________________28___________________________________________________________89_________________________117___ 

           __________________________________________________________181___________________________________________________________ 
 6am8(C) : LGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 
         :                                                                                                                          
 5e0k(B) : LGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 
           __________________________________________________________181___________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6am8(C) : NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVSHGMLSYFLQDEEGQIKPSHSIAPGLDYPGVGPEHAYLKKIQRAEYVAVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM 
         :                                                                                                                          
 5e0k(B) : NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM 
           ________________________________________________________________________________________________________________________ 

           ___________________________                                                                                              
 6am8(C) : SRDEIIIVNLSGRGDKDLDIVLKASGN                                                                                              
         :                                                                                                                          
 5e0k(B) : SRDEIIIVNLSGRGDKDLDIVLKVS**                                                                                              
           ___________________________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.9
Translation
(A) 		0.2
Closure
(%) 		95.5
Bending Residues
( green ) 		  28 - 33
  89 - 90
  117 - 121
  181 - 182
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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