Udp-Galactose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Galactose 4-Epimerase
  Conformer 1
(PDB) 		1ek6 (B)
  Conformer 2
(PDB) 		1i3l (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 220 0.58   4 - 131   137 - 140   145 - 145   148 - 185   191 - 197   242 - 268   309 - 312   314 - 315   320 - 320   322 - 322   338 - 344
2 121 0.51   132 - 136   141 - 144   146 - 147   186 - 190   198 - 241   269 - 308   313 - 313   316 - 319   321 - 321   323 - 337

Sequence


           ________________________________________________________________________________________________________________________ 
 1ek6(B) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA 
         :                                                                                                                          
 1i3l(B) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKA 
           ________________________________________________________________________________________________________________________ 

           _______131__136_140_144______________________________________185__190____197_________________________________________241 
 1ek6(B) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 
         :                                                                                                                          
 1i3l(B) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 
           _______131__136_140_144______________________________________185__190____197_________________________________________241 

           ________________________268_____________________________________308_312____319_______________337_________                
 1ek6(B) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT                
         :                                                                                                                          
 1i3l(B) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT                
           ________________________268_____________________________________308_312____319_______________337_________                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.5
Translation
(A) 		-0.2
Closure
(%) 		96.0
Bending Residues
( green ) 		  131 - 132
  136 - 137
  140 - 141
  144 - 148
  185 - 186
  190 - 191
  197 - 198
  241 - 242
  268 - 269
  308 - 309
  312 - 316
  319 - 323
  337 - 338
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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