Udp-Galactose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Galactose 4-Epimerase
  Conformer 1
(PDB) 		1ek6 (B)
  Conformer 2
(PDB) 		1hzj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 207 0.46   4 - 89   107 - 134   139 - 141   144 - 151   156 - 156   159 - 185   191 - 198   243 - 269   309 - 320   338 - 344
2 23 0.43   90 - 106   152 - 155   157 - 158
3 111 0.5   135 - 138   142 - 143   186 - 190   199 - 242   270 - 308   321 - 337

Sequence


           ______________________________________________________________________________________89______________106_______________ 
 1ek6(B) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA 
         :                                                                                                                          
 1hzj(A) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA 
           ______________________________________________________________________________________89______________106_______________ 

           __________134_138__________151_______________________________185__190_____198_________________________________________24 
 1ek6(B) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 
         :                                                                                                                          
 1hzj(A) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 
           __________134_138__________151_______________________________185__190_____198_________________________________________24 

           2________________________269____________________________________308_________320______________337_________                
 1ek6(B) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT                
         :                                                                                                                          
 1hzj(A) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT                
           2________________________269____________________________________308_________320______________337_________                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.0
Translation
(A) 		-0.2
Closure
(%) 		40.7
Bending Residues
( green ) 		  89 - 90
  106 - 107
  151 - 152
  154 - 159
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		7.9
Translation
(A) 		-0.2
Closure
(%) 		97.8
Bending Residues
( green ) 		  134 - 135
  138 - 139
  141 - 144
  185 - 186
  190 - 191
  198 - 199
  242 - 243
  269 - 270
  308 - 309
  320 - 325
  337 - 338
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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