DynDom - Protein Domain Motions

Udp-Galactose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Udp-Galactose 4-Epimerase
Conformer 1 (PDB)	1hzj (B)
Conformer 2 (PDB)	1i3k (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	199	0.68	4 - 12 14 - 49 52 - 129 144 - 184 189 - 192 198 - 198 250 - 268 310 - 320
2	142	0.41	13 - 13 50 - 51 130 - 143 185 - 188 193 - 197 199 - 249 269 - 309 321 - 344

Sequence

`_________12___________________________________49________________________________________________________________________` `1hzj(B) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA` `:` `1i3k(A) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKA` `_________12___________________________________49________________________________________________________________________` `_____129___________143______________________________________184_188_192__197____________________________________________` `1hzj(B) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY` `:` `1i3k(A) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY` `_____129___________143______________________________________184_188_192__197____________________________________________` `_____249________________268______________________________________309________320____________________________` `1hzj(B) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT**` `:` `1i3k(A) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGTQA` `_____249________________268______________________________________309________320____________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	5.2
Translation (A)	-0.2
Closure (%)	96.6
Bending Residues ( green )	12 - 14 49 - 52 129 - 130 143 - 144 184 - 185 188 - 189 192 - 193 197 - 199 249 - 250 268 - 269 309 - 310 320 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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