DynDom - Protein Domain Motions

Udp-Glucose 6-Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Udp-Glucose 6-Dehydrogenase
Conformer 1 (PDB)	3itk (A)
Conformer 2 (PDB)	3itk (E)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	274	0.17	4 - 228 273 - 305 308 - 315 337 - 338 346 - 347 353 - 353 368 - 370
2	48	0.13	229 - 272 306 - 307 463 - 464
3	136	0.22	316 - 336 339 - 345 348 - 352 354 - 367 371 - 462

Sequence

`________________________________________________________________________________________________________________________` `3itk(A) : SMFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQN` `:` `3itk(E) : *MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQN` `________________________________________________________________________________________________________________________` `__________________________________________________________________________________________________________228___________` `3itk(A) : SNGYKIVTEKSAVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISA` `:` `3itk(E) : SNGYKIVTEKSAVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISA` `__________________________________________________________________________________________________________228___________` `______________________________272_____________________________304_308_________________________336______345____352_______` `3itk(A) : LCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMD` `:` `3itk(E) : LCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMD` `______________________________272_____________________________304_308_________________________336______345____352_______` `_____367____________________________________________________________________________________________462____` `3itk(A) : EGAHLHIYDPKVPREQIVVDLSHP---eDDQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKV` `:` `3itk(E) : EGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKV` `_____367____________________________________________________________________________________________462____`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Fixed Domain	Moving Domain	Rotation Angle	Translation (A)	Closure	Bending Residues
1	2	1.7	-0.1	55.4	228 - 229 272 - 278 304 - 315	Bending Region Analysis
1	3	2.1	0.1	90.7	308 - 316 336 - 339 345 - 348 352 - 354 367 - 371	Bending Region Analysis
2	3	3.2	-0.2	68.1	462 - 464	Bending Region Analysis