Udp-Glucuronate Decarboxylase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Glucuronate Decarboxylase 1
  Conformer 1
(PDB) 		2b69 (A)
  Conformer 2
(PDB) 		4gll (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 231 0.78   6 - 183   186 - 186   215 - 243   277 - 308
2 62 2.62   185 - 185   187 - 214   244 - 276

Sequence


           ________________________________________________________________________________________________________________________ 
 2b69(A) : RKRILITGGAGFVGSHLTDKL--dGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNY-yNPIKTLKTNTIGTLN-lGLAKRVGARLLLASTSEVYG 
         :                                                                                                                          
 4gll(A) : RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYG 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________180_______________________________214________________________241__ 
 2b69(A) : DPEVHPQSEDYWGHVNPIGPRACYDEGKRVAET-cYAY-kQEGVEVRVARIFNTFGPR-h-nDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVAL-nSNVSSPVNLGNPE 
         :                                                                                                                          
 4gll(A) : DPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPE 
           ______________________________________________________264_______________________________298________________________325__ 

           ________________________270_____________________________________________                                                 
 2b69(A) : EHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKL-lGWEPVVPLEEGLNKAIHYFRKELEYQA                                                 
         :                                                                                                                          
 4gll(A) : EHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKE*****                                                 
           ________________________354_____________________________________________                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		35.7
Translation
(A) 		0.7
Closure
(%) 		71.9
Bending Residues
( green ) 		  180 - 187
  214 - 215
  241 - 244
  270 - 278
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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