DynDom - Protein Domain Motions

Udp-N-Acetylglucosamine Enolpyruvyl Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Udp-N-Acetylglucosamine Enolpyruvyl Transferase
Conformer 1 (PDB)	1ejd (B)
Conformer 2 (PDB)	1q3g (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	213	2.12	20 - 229 395 - 397 415 - 415
2	201	0.53	3 - 19 230 - 394 398 - 414 416 - 417

Sequence

`_________________19_____________________________________________________________________________________________________` `1ejd(B) : MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERgSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARP` `:` `1q3g(A) : MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERgSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARP` `_________________19_____________________________________________________________________________________________________` `_________________________________________________________________________________________________________229____________` `1ejd(B) : VDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVA` `:` `1q3g(A) : VDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVA` `_________________________________________________________________________________________________________229____________` `________________________________________________________________________________________________________________________` `1ejd(B) : AAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLS` `:` `1q3g(A) : AAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTAMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLS` `________________________________________________________________________________________________________________________` `______________________________394_________________414_____` `1ejd(B) : GAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE` `:` `1q3g(A) : GAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE` `______________________________394_________________414_____`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	16.4
Translation (A)	0.6
Closure (%)	84.5
Bending Residues ( green )	19 - 20 229 - 230 394 - 395 397 - 398 414 - 417
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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