DynDom - Protein Domain Motions

Udp-Sugar Pyrophosphorylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Udp-Sugar Pyrophosphorylase
Conformer 1 (PDB)	3ogz (A)
Conformer 2 (PDB)	3oh2 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	549	0.94	6 - 299 304 - 304 308 - 324 351 - 352 356 - 608
2	24	1.31	300 - 303 305 - 307 325 - 338 353 - 355

Sequence

`________________________________________________________________________________________________________________________` `3ogz(A) : NPSNSNLQALREELCTPGLDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLARESEEVDFAALEMPPLIFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAG` `:` `3oh2(A) : NPSNSNLQALREELCTPGLDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLARESEEVDFAALEMPPLIFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAG` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `3ogz(A) : GLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVaQPLVN` `:` `3oh2(A) : GLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVaQPLVN` `________________________________________________________________________________________________________________________` `________________________________________299_303_307______________324___________338___355________________________________` `3ogz(A) : DWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRAL-gFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPK` `:` `3oh2(A) : DWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNgFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPK` `________________________________________299_303_307______________324___________338___355________________________________` `________________________________________________________________________________________________________________________` `3ogz(A) : YSDETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFERFSYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCASS` `:` `3oh2(A) : YSDETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFERFSYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCASS` `________________________________________________________________________________________________________________________` `___________________________________________________________________________________________________` `3ogz(A) : GSLDDLARVFPTPEKVHIDQHSTLIVEGRVIIESLELYGALTIRGPTDSMALPHVVRNAVVRNAGWSVHAILSLCsRLSEVDRIRGFVLKKTAMAVMDC` `:` `3oh2(A) : GSLDDLARVFPTPEKVHIDQHSTLIVEGRVIIESLELYGALTIRGPTDSMALPHVVRNAVVRNAGWSVHAILSLdSRLSEVDRIRGFVLKKTAMAVMDC` `___________________________________________________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	15.7
Translation (A)	0.5
Closure (%)	99.2
Bending Residues ( green )	299 - 300 303 - 305 307 - 308 324 - 325 338 - 353 355 - 356
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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