Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uridylate Kinase
  Conformer 1
(PDB) 		2j4j (A)
  Conformer 2
(PDB) 		2j4k (B)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 180 0.63   8 - 142   163 - 219
2 20 0.76   143 - 162

Sequence


           ________________________________________________________________________________________________________________________ 
 2j4j(A) : MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTA 
         :                                                                                                                          
 2j4k(B) : MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTA 
           ________________________________________________________________________________________________________________________ 

           __________________141__________________162______________________________________________________                         
 2j4j(A) : AVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEeLLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV                         
         :                                                                                                                          
 2j4k(B) : AVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKI--eLLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEPV                         
           __________________141__________________162______________________________________________________                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.3
Translation
(A) 		0.3
Closure
(%) 		88.0
Bending Residues
( green ) 		  141 - 143
  162 - 185
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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