Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uridylate Kinase
  Conformer 1
(PDB) 		2bnd (A)
  Conformer 2
(PDB) 		2bnd (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 196 0.52   7 - 162   165 - 167   184 - 184   190 - 212   220 - 228   232 - 236
2 36 0.68   163 - 164   168 - 183   185 - 189   213 - 219   229 - 231   237 - 239

Sequence


           ________________________________________________________________________________________________________________________ 
 2bnd(A) : *AKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNAVCDSYSWAEAI 
         :                                                                                                                          
 2bnd(B) : NAKPVYKRILLKLSGEALQGTE-fGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAEAI 
           ________________________________________________________________________________________________________________________ 

           ____________________________________162__167_____________183___189____________________212____219______228_____236_____   
 2bnd(A) : SLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE   
         :                                                                                                                          
 2bnd(B) : SLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE   
           ____________________________________162__167_____________183___189____________________212____219______228_____236_____   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.6
Translation
(A) 		-0.1
Closure
(%) 		95.7
Bending Residues
( green ) 		  162 - 165
  167 - 168
  183 - 185
  189 - 190
  212 - 213
  219 - 220
  228 - 229
  231 - 232
  236 - 237
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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