Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uridylate Kinase
  Conformer 1
(PDB) 		2bne (A)
  Conformer 2
(PDB) 		2bne (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 194 0.48   7 - 162   191 - 196   199 - 214   220 - 236
2 35 0.64   163 - 190   197 - 198   215 - 219   237 - 239

Sequence


           ________________________________________________________________________________________________________________________ 
 2bne(A) : **AKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAEA 
         :                                                                                                                          
 2bne(B) : TNAKPVYKRILLKLSGEALQGTE-fGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAEA 
           ________________________________________________________________________________________________________________________ 

           _____________________________________162_________________________190_____________________214__219______________236_____  
 2bne(A) : ISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADP---pTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE  
         :                                                                                                                          
 2bne(B) : ISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE  
           _____________________________________162_________________________190_____________________214__219______________236_____  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.1
Translation
(A) 		-0.2
Closure
(%) 		93.1
Bending Residues
( green ) 		  162 - 163
  190 - 199
  214 - 215
  219 - 220
  236 - 237
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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