Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uridylate Kinase
  Conformer 1
(PDB) 		2bnd (A)
  Conformer 2
(PDB) 		2bne (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 195 0.57   7 - 163   184 - 186   191 - 213   220 - 227   233 - 237
2 37 0.75   164 - 183   187 - 190   214 - 219   228 - 232   238 - 239

Sequence


           ________________________________________________________________________________________________________________________ 
 2bnd(A) : **AKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNAVCDSYSWAEA 
         :                                                                                                                          
 2bne(B) : TNAKPVYKRILLKLSGEALQGTE-fGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAEA 
           ________________________________________________________________________________________________________________________ 

           ______________________________________163_________________183____190____________________213___219_____227__232__237____  
 2bnd(A) : ISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE  
         :                                                                                                                          
 2bne(B) : ISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE  
           ______________________________________163_________________183____190____________________213___219_____227__232__237____  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.7
Translation
(A) 		-0.2
Closure
(%) 		95.7
Bending Residues
( green ) 		  163 - 164
  183 - 188
  190 - 195
  213 - 214
  219 - 220
  227 - 228
  232 - 233
  237 - 238
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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