Vimentin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Vimentin
  Conformer 1
(PDB) 		3swk (B)
  Conformer 2
(PDB) 		3uf1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 21 0.45   184 - 205
2 21 0.39   162 - 182
3 30 0.87   206 - 235

Sequence


           _________________________________182____________________205____________________________________________                  
 3swk(B) : ******EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL************                  
         :                                                                                                                          
 3uf1(A) : LGDLYEEErELRRQVDQLTNDKARVEVERDNLAEDI-rLREKLQEE-lQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI                  
           _________________________________182____________________205____________________________________________                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.4
Translation
(A) 		0.0
Closure
(%) 		79.1
Bending Residues
( green ) 		  182 - 184
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		16.8
Translation
(A) 		-1.4
Closure
(%) 		88.6
Bending Residues
( green ) 		  205 - 206
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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