Vimentin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Vimentin
  Conformer 1
(PDB) 		3uf1 (A)
  Conformer 2
(PDB) 		3uf1 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 24 0.44   180 - 205
2 31 0.64   148 - 179
3 29 0.49   218 - 246

Sequence


           ________________________________179_____________________205____________________________________________                  
 3uf1(A) : **LGDLYEEErELRRQVDQLTNDKARVEVERDNLAEDIrLREKLQEElQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI                  
         :                                                                                                                          
 3uf1(B) : SRLGDLYEEErELRRQVDQLTNDKARVEVERDNLAEDIrLREKLQEElQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI                  
           ________________________________179_____________________205____________________________________________                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.2
Translation
(A) 		0.2
Closure
(%) 		99.4
Bending Residues
( green ) 		  179 - 180
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		19.1
Translation
(A) 		-3.9
Closure
(%) 		96.9
Bending Residues
( green ) 		  205 - 218
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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