Virb11 Homolog

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Virb11 Homolog
  Conformer 1
(PDB) 		1nly (A)
  Conformer 2
(PDB) 		1nlz (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 180 0.54   141 - 204   207 - 326
2 115 1.13   26 - 140   205 - 206

Sequence


           ________________________________________________________________________________________________________________________ 
 1nly(A) : LSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLhFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDET 
         :                                                                                                                          
 1nlz(F) : ******************ALNPLRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLhFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDET 
           ________________________________________________________________________________________________________________________ 

           ___133___________________________________________________________________204____________________________________________ 
 1nly(A) : ISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGEL 
         :                                                                                                                          
 1nlz(F) : ISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGEL 
           ___133___________________________________________________________________204____________________________________________ 

           _____________________________________________________________________________                                            
 1nly(A) : RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIK                                            
         :                                                                                                                          
 1nlz(F) : RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIK                                            
           _____________________________________________________________________________                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.1
Translation
(A) 		2.4
Closure
(%) 		82.1
Bending Residues
( green ) 		  133 - 141
  204 - 207
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download