Actin-Related Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-Related Protein 3
  Conformer 1
(PDB)
1k8k (A)
  Conformer 2
(PDB)
1k8k (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 47 11.12   72 - 118
2 23 9.44   13 - 21   58 - 71

Sequence


           ________________________________________________________________________________________________________________________ 
 1k8k(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 1k8k(C) : AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________71___________________________________ 
 1k8k(A) : **************************GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVD-DLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 
         :                                                                                                                          
 1k8k(C) : ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 
           __________________________________________________________________________________206___________________________________ 

           ________________________________________________________________________________________________________________________ 
 1k8k(A) : DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKA 
         :                                                                                                                          
 1k8k(C) : SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPtARERFQNLDKKAaGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLKIV****** 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1k8k(A) : VKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDAR 
         :                                                                                                                          
 1k8k(C) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________                                                     
 1k8k(A) : LKLSEELSkPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS                                                     
         :                                                                                                                          
 1k8k(C) : ********************************************************************                                                     
           ____________________________________________________________________                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
169.7
Translation
(A)
-25.6
Closure
(%)
40.2
Bending Residues
( green )
  71 - 76
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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