Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB)
1j6z (A)
  Conformer 2
(PDB)
4cbx (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 248 0.98   8 - 8   54 - 54   80 - 90   101 - 107   123 - 125   127 - 347   354 - 357
2 95 1.08   9 - 35   55 - 79   91 - 100   108 - 122   126 - 126   348 - 353   358 - 369

Sequence


           ____8_________________________35__________________________________________79_________90_______100____107____________122_ 
 1j6z(A) : ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
         :                                                                                                                          
 4cbx(A) : *SIALVVDNGSGMVKSGLAGDDAPKCVFPSIIGIP-----------kECYVGDEAQNKRGILTLKYPIEHGIVTNWDDMEKIWRHTFFNELRVSPEEHPVLLTEAPLNPKTNREKMTQIM 
           ____8_________________________35__________________________________________79_________90_______100____107____________122_ 

           ________________________________________________________________________________________________________________________ 
 1j6z(A) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMA-TAASSSSLEKSYEL 
         :                                                                                                                          
 4cbx(A) : FESFDVPAMYVSIQAILSLYASGRTTGIVLDSGDGVTHTVPIYEGYVLPHAINRTDMAGRDLTYYMMKLFTERGYTFTTTAEREIVRDIKEKLCYIALDYDEELKKSEERTEEVEEMYEL 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________347_______357_____ 
 1j6z(A) : PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEY 
         :                                                                                                                          
 4cbx(A) : PDGNLITVGSERFRCPEALFNPSLIGRECPGLHITAYQSIMKCDIDIRKELYNNIVLSGGTTMYNYIGERLTNEMTSLAPPSMKIKVIAPPERKYSVWIGGSILSSLSTFQKMWITKEEY 
           ______________________________________________________________________________________________________348_______358_____ 

           __________                                                                                                               
 1j6z(A) : DEAGPSIVHR                                                                                                               
         :                                                                                                                          
 4cbx(A) : DESGPSIVHR                                                                                                               
           __________                                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.9
Translation
(A)
0.1
Closure
(%)
8.6
Bending Residues
( green )
  8 - 9
  35 - 55
  79 - 80
  90 - 91
  100 - 101
  107 - 108
  122 - 123
  125 - 127
  347 - 354
  357 - 358
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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