Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB)
1j6z (A)
  Conformer 2
(PDB)
1yxq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 199 0.78   142 - 165   169 - 343
2 151 0.84   8 - 141   166 - 168   344 - 369

Sequence


           ________________________________________________________________________________________________________________________ 
 1j6z(A) : ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMF 
         :                                                                                                                          
 1yxq(A) : *TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR-----------dSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMF 
           ________________________________________________________________________________________________________________________ 

           ______________141_____________________165_______________________________________________________________________________ 
 1j6z(A) : ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPD 
         :                                                                                                                          
 1yxq(A) : ETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPD 
           ______________141_____________________165_______________________________________________________________________________ 

           ________________________________________________________________________________________________343_____________________ 
 1j6z(A) : GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 
         :                                                                                                                          
 1yxq(A) : GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 
           ________________________________________________________________________________________________343_____________________ 

           ________                                                                                                                 
 1j6z(A) : AGPSIVHR                                                                                                                 
         :                                                                                                                          
 1yxq(A) : AGPSIVH*                                                                                                                 
           ________                                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.1
Translation
(A)
0.0
Closure
(%)
16.9
Bending Residues
( green )
  141 - 142
  165 - 169
  343 - 344
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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