Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB)
1j6z (A)
  Conformer 2
(PDB)
1lcu (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 219 1.01   7 - 144   149 - 154   162 - 177   218 - 220   277 - 290   295 - 302   307 - 307   311 - 318   329 - 329   336 - 370
2 134 0.96   145 - 148   155 - 161   178 - 217   221 - 276   291 - 294   303 - 306   308 - 310   319 - 328   330 - 335

Sequence


           ________________________________________________________________________________________________________________________ 
 1j6z(A) : ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
         :                                                                                                                          
 1lcu(A) : *TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRH----------dSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
           ________________________________________________________________________________________________________________________ 

           __________________144_148___154____161_____________177_____________________________________217__________________________ 
 1j6z(A) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 
         :                                                                                                                          
 1lcu(A) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 
           __________________154_158___164____171_____________187_____________________________________227__________________________ 

           ______________________________276___________290_294_____302_306_310_____318_______328____335____________________________ 
 1j6z(A) : DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 
         :                                                                                                                          
 1lcu(A) : DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 
           ______________________________286___________300_304_____312_316_320_____328_______338____345____________________________ 

           ____________                                                                                                             
 1j6z(A) : EAGPSIVHR***                                                                                                             
         :                                                                                                                          
 1lcu(A) : EAGPSIVHRKCF                                                                                                             
           ____________                                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.6
Translation
(A)
0.5
Closure
(%)
37.7
Bending Residues
( green )
  144 - 145
  148 - 149
  154 - 155
  161 - 162
  177 - 178
  217 - 218
  220 - 221
  276 - 277
  290 - 291
  294 - 295
  302 - 303
  306 - 308
  310 - 311
  318 - 319
  328 - 330
  335 - 336
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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