Actin, Cytoplasmic 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Cytoplasmic 1
  Conformer 1
(PDB)
3ub5 (A)
  Conformer 2
(PDB)
3u4l (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 201 1.01   148 - 166   171 - 352
2 142 0.81   11 - 147   167 - 170   353 - 370

Sequence


           ________________________________________________________________________________________________________________________ 
 3ub5(A) : AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 
         :                                                                                                                          
 3u4l(A) : AALVVDNGSGMCKAGFAGDDAPRAVFPSIVG--------------dSYVGDEAQSKRGI---kYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 
           ________________________________________________________________________________________________________________________ 

           ________________144___________________166_170___________________________________________________________________________ 
 3ub5(A) : TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDG 
         :                                                                                                                          
 3u4l(A) : TFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDG 
           ________________144___________________166_170___________________________________________________________________________ 

           ________________________________________________________________________________________________________352_____________ 
 3ub5(A) : QVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 
         :                                                                                                                          
 3u4l(A) : QVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 
           ________________________________________________________________________________________________________352_____________ 

           __________                                                                                                               
 3ub5(A) : GPSIVHRKCF                                                                                                               
         :                                                                                                                          
 3u4l(A) : GPSIVHRKCF                                                                                                               
           __________                                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.7
Translation
(A)
-0.5
Closure
(%)
99.8
Bending Residues
( green )
  144 - 148
  166 - 167
  170 - 171
  352 - 353
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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