Adenosylhomocysteinase 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenosylhomocysteinase 3
  Conformer 1
(PDB)
3gvp (B)
  Conformer 2
(PDB)
1b3r (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 240 1.41   191 - 375   378 - 378   382 - 383   533 - 587
2 149 1.2   376 - 377   379 - 381   384 - 527

Sequence


           ________________________________________________________________________________________________________________________ 
 3gvp(B) : SMKQQKNSKGSSDFCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWC 
         :                                                                                                                          
 1b3r(A) : ***********LPYKVADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWC 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________363_______________381_______________________________ 
 3gvp(B) : IDRCVNVEGWQPNMILDDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLa--GKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALK 
         :                                                                                                                          
 1b3r(A) : IEQTLHFKDGPLNMILDDGGDLTNLIHTKHPQLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALR 
           ____________________________________________________________________183_______________201_______________________________ 

           _______________________________________________________________________________________________________________526______ 
 3gvp(B) : AMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCSTV- 
         :                                                                                                                          
 1b3r(A) : GFGARVIITEIDPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILLAEGRLVNLGCAMGH 
           _______________________________________________________________________________________________________________346______ 

           ________________________________________________________________________________                                         
 3gvp(B) : PTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKP*****                                         
         :                                                                                                                          
 1b3r(A) : PSFVMSNSFTNQVMAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY                                         
           ________________________________________________________________________________                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.7
Translation
(A)
2.7
Closure
(%)
94.9
Bending Residues
( green )
  363 - 379
  381 - 384
  526 - 534
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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