Adenylate Kinase Isoenzyme-2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase Isoenzyme-2
  Conformer 1
(PDB)
2ak2  
  Conformer 2
(PDB)
2rh5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 167 1.61   19 - 141   180 - 226
2 31 2.22   142 - 179

Sequence


           ________________________________________________________________________________________________________________________ 
 2ak2    : PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPD 
         :                                                                                                                          
 2rh5(A) : ***MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIE---EVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPD 
           ________________________________________________________________________________________________________________________ 

           ____140___________________________________178_______________________________________________________                     
 2ak2    : SLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKATS                     
         :                                                                                                                          
 2rh5(A) : EVVIERLSGRRINPETGEVYHVKYNPPPPGVK-------VIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVI*****                     
           ____121___________________________________152_______________________________________________________                     

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
46.4
Translation
(A)
-2.0
Closure
(%)
79.9
Bending Residues
( green )
  140 - 142
  178 - 180
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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