Aerolysin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aerolysin
  Conformer 1
(PDB)
3c0m (A)
  Conformer 2
(PDB)
3c0n (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 288 0.63   80 - 198   225 - 270   297 - 409   448 - 454   458 - 460
2 72 0.34   8 - 79
3 76 0.55   199 - 224   271 - 296   410 - 447   455 - 457   461 - 461

Sequence


           ____________________________________________________________________________79__________________________________________ 
 3c0m(A) : EPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAH 
         :                                                                                                                          
 3c0n(A) : EPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAH 
           ____________________________________________________________________________79__________________________________________ 

           __________________________________________________________________________198_______________________224_________________ 
 3c0m(A) : YLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTT 
         :                                                                                                                          
 3c0n(A) : YLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTT 
           __________________________________________________________________________198_______________________224_________________ 

           __________________________270_______________________296_________________________________________________________________ 
 3c0m(A) : KNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDK 
         :                                                                                                                          
 3c0n(A) : KNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDK 
           __________________________270_______________________296_________________________________________________________________ 

           _____________________________________________409_______________444_____________460________                               
 3c0m(A) : RYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIGAPVPL-lRLEIPLDAQELSGLGFNNVSLSVTPAA                               
         :                                                                                                                          
 3c0n(A) : RYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIGAPVPLgLRLEIPLDAQELSGLGFNNVSLSVTPAA                               
           _____________________________________________409_______________444_____________460________                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.2
Translation
(A)
-0.2
Closure
(%)
86.0
Bending Residues
( green )
  79 - 80
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
6.2
Translation
(A)
-0.5
Closure
(%)
29.5
Bending Residues
( green )
  198 - 199
  224 - 225
  270 - 271
  296 - 297
  409 - 410
  444 - 458
  460 - 461
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download