Akap9-Braf Fusion Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Akap9-Braf Fusion Protein
  Conformer 1
(PDB)
3og7 (A)
  Conformer 2
(PDB)
1uwh (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 221 1.43   452 - 483   504 - 717
2 20 1.5   484 - 503

Sequence


           _________________________________483_________________503________________________________________________________________ 
 3og7(A) : *DWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLH---ASfEMKKLIDIARQTARGMDYL 
         :                                                                                                                          
 1uwh(A) : DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYL 
           _________________________________482_________________502________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3og7(A) : HAKSIIHRDLKSNNIFLHEDNTVKIGDFG------gSILWMAPEVIR----nPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKK 
         :                                                                                                                          
 1uwh(A) : HAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVlSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKK 
           ________________________________________________________________________________________________________________________ 

           ________________________                                                                                                 
 3og7(A) : KRDERPSFPRILAEIEELARE***                                                                                                 
         :                                                                                                                          
 1uwh(A) : KRDERPLFPQILASIELLARSLPK                                                                                                 
           ________________________                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
33.6
Translation
(A)
-1.2
Closure
(%)
74.5
Bending Residues
( green )
  483 - 484
  503 - 506
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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