Arginine Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Arginine Kinase
  Conformer 1
(PDB)
1m15 (A)
  Conformer 2
(PDB)
3m10 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 129 1.82   98 - 128   157 - 164   172 - 186   212 - 219   230 - 258   276 - 288   331 - 355
2 181 1.17   4 - 97   129 - 156   165 - 171   187 - 211   220 - 229   259 - 275
3 32 1.06   289 - 330

Sequence


           ______________________________________________________________________________________________97________________________ 
 1m15(A) : VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFII 
         :                                                                                                                          
 3m10(B) : VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFII 
           ______________________________________________________________________________________________97________________________ 

           ____128_________________________156_____164____171_____________________________________211_____219_______229____________ 
 1m15(A) : STRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKT 
         :                                                                                                                          
 3m10(B) : STRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKT 
           ____128_________________________156_____164____171_____________________________________211_____219_______229____________ 

           ____________256________________275__________288_______________________________________330___________________________     
 1m15(A) : VYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA     
         :                                                                                                                          
 3m10(B) : VYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRG----------gVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA     
           ____________256________________275__________288_______________________________________330___________________________     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.0
Translation
(A)
0.1
Closure
(%)
96.5
Bending Residues
( green )
  97 - 98
  128 - 129
  156 - 157
  164 - 165
  171 - 187
  211 - 212
  219 - 220
  229 - 230
  256 - 259
  275 - 276
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
19.1
Translation
(A)
0.3
Closure
(%)
99.6
Bending Residues
( green )
  288 - 289
  330 - 332
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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