Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1cll (A)
  Conformer 2
(PDB)
2ix7 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 47 2.29   6 - 28   57 - 80
2 28 1.31   29 - 56
3 58 3.86   81 - 138

Sequence


           ________________________27___________________________56____________________78___________________________________________ 
 1cll(A) : **LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
         :                                                                                                                          
 2ix7(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
           ________________________27___________________________56____________________78___________________________________________ 

           __________________________                                                                                               
 1cll(A) : DEMIREADIDGDGQVNYEEFVQMMTA                                                                                               
         :                                                                                                                          
 2ix7(A) : DEMIREADIDGDGQVNYEEFVQMMT*                                                                                               
           __________________________                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
61.4
Translation
(A)
3.4
Closure
(%)
99.7
Bending Residues
( green )
  27 - 31
  56 - 60
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
142.8
Translation
(A)
4.9
Closure
(%)
65.2
Bending Residues
( green )
  78 - 81
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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