Complement Factor B

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Complement Factor B
  Conformer 1
(PDB)
2ok5 (A)
  Conformer 2
(PDB)
3hrz (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 301 1.17   77 - 252   271 - 306   311 - 311   313 - 314   316 - 316   320 - 429
2 64 0.5   13 - 76
3 310 1.21   260 - 270   307 - 310   312 - 312   315 - 315   317 - 319   430 - 738

Sequence


           __________________________________________________________________76____________________________________________________ 
 2ok5(A) : QGSCSLEGVEIKGGSFRLLQEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSG 
         :                                                                                                                          
 3hrz(D) : **SCSLEGVEIKGGSFRLLQEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSG 
           __________________________________________________________________76____________________________________________________ 

           __________________________________________________________________________________________________________252___________ 
 2ok5(A) : QTAICDNGAGYCSNPGIPIGTRKVGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQEVAEAFLSSLTETIkRKIVLDPSGSMNIYLVLDGSDSIGASNFTG 
         :                                                                                                                          
 3hrz(D) : QTAICDNGAGYCSNPGIPIGTRKVGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQEVAEAFLSSLTET-kRKIVLDPSGSMNIYLVLDGSGSIGASDFTG 
           __________________________________________________________________________________________________________252___________ 

           ____270_________________________________306_310_________________________________________________________________________ 
 2ok5(A) : AKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYE------gTNTKKALQAVYSMMSW-vPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLY 
         :                                                                                                                          
 3hrz(D) : AKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPvPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLY 
           ____270_________________________________306_310_________________________________________________________________________ 

           _________________________________________429____________________________________________________________________________ 
 2ok5(A) : IGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGMVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTV 
         :                                                                                                                          
 3hrz(D) : IGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGMVWEH---tDYHKQPWQAKISVIRPs-----CMGAVVSEYFVLTAAHCFT- 
           _________________________________________429____________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2ok5(A) : DDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNG 
         :                                                                                                                          
 3hrz(D) : ----hSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________________________    
 2ok5(A) : DKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDLGFLAAA    
         :                                                                                                                          
 3hrz(D) : DKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVC------kQVPAHARDFHINLFQVLPWLKEKLQDEDLGFLA**    
           _____________________________________________________________________________________________________________________    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
26.6
Translation
(A)
-1.8
Closure
(%)
75.7
Bending Residues
( green )
  76 - 77
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
11.7
Translation
(A)
-0.4
Closure
(%)
20.9
Bending Residues
( green )
  252 - 262
  270 - 271
  306 - 307
  310 - 320
  429 - 430
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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