Crispr-Associated Endonuclease Cas1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Crispr-Associated Endonuclease Cas1
  Conformer 1
(PDB)
4qdl (A)
  Conformer 2
(PDB)
1xcb (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 46 8.23   22 - 67
2 25 7.47   68 - 92

Sequence


           ________________________________________________________________________________________________________________________ 
 4qdl(A) : *********************************************************************************************************************DRV 
         :                                                                                                                          
 1xcb(A) : KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGELAQVTAFQVRKDLSYFGSYGTRGVGYTVPVLKRELRHILGLNRKWGLCIVGgRLGSALADYPGFGESFELRGFFDVDPEKVGRPV 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________67___________________________________________________________________ 
 4qdl(A) : SMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVG-SVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSV 
         :                                                                                                                          
 1xcb(A) : RGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENVDFLAGLTRLSFAILNPKWR************************************ 
           __________________________________________________175___________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4qdl(A) : EQLRGIEGSRVRATYALLAKQYGVTWNGRdTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKL 
         :                                                                                                                          
 1xcb(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ________________                                                                                                         
 4qdl(A) : IPLIEDVLAAGEIQPP                                                                                                         
         :                                                                                                                          
 1xcb(A) : ****************                                                                                                         
           ________________                                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
163.6
Translation
(A)
-3.4
Closure
(%)
55.7
Bending Residues
( green )
  67 - 68
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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