Cyclin-Dependent Protein Kinase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cyclin-Dependent Protein Kinase 2
  Conformer 1
(PDB)
1aq1  
  Conformer 2
(PDB)
1jsu (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 225 1.87   57 - 294
2 32 3.74   17 - 56

Sequence


           ______________________________________________________56________________________________________________________________ 
 1aq1    : MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------vPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 
         :                                                                                                                          
 1jsu(A) : ************GTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 
           ______________________________________________________56________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1aq1    : HRVLHRDLKPQNLLINTEGAIKLADFGL------------eVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFP 
         :                                                                                                                          
 1jsu(A) : HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYhEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFP 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________                                                                
 1aq1    : KWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                                
         :                                                                                                                          
 1jsu(A) : KWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                                
           _________________________________________________________                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
34.6
Translation
(A)
3.7
Closure
(%)
93.1
Bending Residues
( green )
  56 - 57
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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