Cytochrome P450cam

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cytochrome P450cam
  Conformer 1
(PDB) 		1akd (A)
  Conformer 2
(PDB) 		3l61 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 287 0.76   12 - 111   118 - 122   135 - 158   233 - 238   252 - 412
2 105 1.44   112 - 117   123 - 134   159 - 232   239 - 251

Sequence


           ________________________________________________________________________________________100______________117____________ 
 1akd(A) : NLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPREAGEAYDFIPTSMDPPEQRQFRALANQVVGMPVVDKLEN 
         :                                                                                                                          
 3l61(A) : NLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIP--------fIPTSM-pPEQRQFRALANQVVGMPVVDKLEN 
           ________________________________________________________________________________________100______________117____________ 

           _133____________________156____________________________________________________________________227_____________________2 
 1akd(A) : RIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLPEEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGG 
         :                                                                                                                          
 3l61(A) : RIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLPEEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGG 
           _133____________________156____________________________________________________________________227_____________________2 

           51______________________________________________________________________________________________________________________ 
 1akd(A) : LDTVVNFLSFSMEFLAKSPEHRQELIQRPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIV 
         :                                                                                                                          
 3l61(A) : LDTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENAAPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIV 
           51______________________________________________________________________________________________________________________ 

           _____________________________________________                                                                            
 1akd(A) : TLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPATTKAV                                                                            
         :                                                                                                                          
 3l61(A) : TLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPATTKAV                                                                            
           _____________________________________________                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.8
Translation
(A) 		-0.1
Closure
(%) 		80.1
Bending Residues
( green ) 		  100 - 112
  117 - 123
  133 - 135
  156 - 159
  227 - 240
  251 - 252
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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