D-Galactose/d-Glucose Binding Protein (/Ggbp)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Galactose/d-Glucose Binding Protein (/Ggbp)
  Conformer 1
(PDB)
2gbp  
  Conformer 2
(PDB)
3gbp  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 188 0.29   13 - 13   15 - 22   24 - 27   107 - 257   260 - 262   285 - 305
2 113 0.37   5 - 12   14 - 14   23 - 23   28 - 106   258 - 259   263 - 284

Sequence


           __________12________22___27____________________________________________________________________________106______________ 
 2gbp    : ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 
         :                                                                                                                          
 3gbp    : **TRIGVTIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGVIQG 
           __________12________22___27____________________________________________________________________________106______________ 

           ________________________________________________________________________________________________________________________ 
 2gbp    : DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 
         :                                                                                                                          
 3gbp    : DLIAKHWQANQGWDLNKDGKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTEQLALDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 
           ________________________________________________________________________________________________________________________ 

           ______________257__262___________________284_________________________                                                    
 2gbp    : ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK                                                    
         :                                                                                                                          
 3gbp    : ALALVKSGAMAGTVLNDANNQAKATFDLAKNLAEGKGAADGTSWKIENKIVRVPYVGVDKDNLSEFT**                                                    
           ______________257__262___________________284_________________________                                                    

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.9
Translation
(A)
0.3
Closure
(%)
94.3
Bending Residues
( green )
  12 - 15
  22 - 24
  27 - 33
  106 - 108
  257 - 260
  262 - 263
  284 - 285
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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