Diaminopimelate Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Diaminopimelate Epimerase
  Conformer 1
(PDB)
2otn (A)
  Conformer 2
(PDB)
2otn (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 145 0.36   121 - 272
2 137 0.5   -3 - 120   273 - 285

Sequence


           ________________________________________________________________________________________________________________________ 
 2otn(A) : **VPRGSHMSQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVT 
         :                                                                                                                          
 2otn(B) : GLVPRGSHMSQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVT 
           ________________________________________________________________________________________________________________________ 

           _____120________________________________________________________________________________________________________________ 
 2otn(A) : VEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACA 
         :                                                                                                                          
 2otn(B) : VEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWER-------cGTGACA 
           _____120________________________________________________________________________________________________________________ 

           _____________________________________272_______________                                                                  
 2otn(A) : AVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYKIE                                                                  
         :                                                                                                                          
 2otn(B) : AVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYKIE                                                                  
           _____________________________________272_______________                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.9
Translation
(A)
-0.3
Closure
(%)
87.4
Bending Residues
( green )
  120 - 121
  272 - 273
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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