Dihydrodipicolinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Synthase
  Conformer 1
(PDB)
3m5v (B)
  Conformer 2
(PDB)
3ler (C)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 242 0.18   7 - 15   18 - 24   31 - 40   49 - 54   78 - 294
2 39 0.16   16 - 17   25 - 30   41 - 48   55 - 77

Sequence


           _____________15_______24____30________40______48____54_____________________77___________________________________________ 
 3m5v(B) : NAdKNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLY 
         :                                                                                                                          
 3ler(C) : ***KNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLY 
           _____________15_______24____30________40______48____54_____________________77___________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3m5v(B) : EHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNI 
         :                                                                                                                          
 3ler(C) : EHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGV-eASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNI 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________                                                                    
 3m5v(B) : NKILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                    
         :                                                                                                                          
 3ler(C) : NKILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                    
           _____________________________________________________                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
1.5
Translation
(A)
0.0
Closure
(%)
80.0
Bending Residues
( green )
  15 - 18
  24 - 25
  30 - 31
  40 - 41
  48 - 49
  54 - 55
  77 - 81
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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