Dihydrodipicolinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Synthase
  Conformer 1
(PDB)
3m5v (B)
  Conformer 2
(PDB)
3ler (D)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 221 0.23   9 - 18   26 - 51   61 - 245   288 - 293
2 57 0.23   19 - 25   52 - 60   246 - 287

Sequence


           ________________18_____25________________________51_______60____________________________________________________________ 
 3m5v(B) : NAdKNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLY 
         :                                                                                                                          
 3ler(D) : **DKNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLY 
           ________________18_____25________________________51_______60____________________________________________________________ 

           _______________________________________________________________________________________________________________________2 
 3m5v(B) : EHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNI 
         :                                                                                                                          
 3ler(D) : EHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGV-eASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNI 
           _______________________________________________________________________________________________________________________2 

           45_______________________________280_________________                                                                    
 3m5v(B) : NKILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                    
         :                                                                                                                          
 3ler(D) : NKILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                    
           45_______________________________280_________________                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.1
Translation
(A)
0.0
Closure
(%)
93.6
Bending Residues
( green )
  18 - 19
  25 - 26
  51 - 52
  60 - 73
  245 - 247
  280 - 293
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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