4-Diphosphocytidyl-2-C-Methylerythritol Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 4-Diphosphocytidyl-2-C-Methylerythritol Synthetase
  Conformer 1
(PDB)
1inj (A)
  Conformer 2
(PDB)
1i52 (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 176 0.22   9 - 11   27 - 55   64 - 79   97 - 224
2 29 0.23   12 - 15   56 - 63   80 - 96

Sequence


           _____11__15______________________________________55______63________73____________________95_____________________________ 
 1inj(A) : HLDVCAVVPAA-----------kQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALS 
         :                                                                                                                          
 1i52(A) : HLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALS 
           _____11__15______________________________________55______63________73____________________95_____________________________ 

           _________________________________________________________________________________________________________                
 1inj(A) : ETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLT*                
         :                                                                                                                          
 1i52(A) : ETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTR                
           _________________________________________________________________________________________________________                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.4
Translation
(A)
0.0
Closure
(%)
29.4
Bending Residues
( green )
  11 - 12
  15 - 34
  55 - 56
  63 - 64
  73 - 80
  95 - 99
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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