D-Mandelate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Mandelate Dehydrogenase
  Conformer 1
(PDB)
2w2l (C)
  Conformer 2
(PDB)
2w2l (D)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 199 0.24   114 - 312
2 139 0.27   5 - 113   313 - 342

Sequence


           ______________________________________________________________________________________________________________113_______ 
 2w2l(C) : *PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDL 
         :                                                                                                                          
 2w2l(D) : MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDL 
           ______________________________________________________________________________________________________________113_______ 

           ________________________________________________________________________________________________________________________ 
 2w2l(C) : ALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE 
         :                                                                                                                          
 2w2l(D) : ALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________312_________________________________                
 2w2l(C) : AFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKVFAPS                
         :                                                                                                                          
 2w2l(D) : AFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKVFAPS                
           _____________________________________________________________________312_________________________________                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.5
Translation
(A)
0.0
Closure
(%)
29.2
Bending Residues
( green )
  113 - 114
  312 - 313
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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