DNA Double-Strand Break Repair Protein Mre11

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Double-Strand Break Repair Protein Mre11
  Conformer 1
(PDB)
3dsc (A)
  Conformer 2
(PDB)
3dsd (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 216 0.41   8 - 109   130 - 228   257 - 271
2 20 0.6   110 - 129
3 83 0.76   229 - 256   272 - 326

Sequence


           ______________________________________________________________________________________________________105_______________ 
 3dsc(A) : MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFGLVYVIGMRKEKVENEYLT 
         :                                                                                                                          
 3dsd(A) : MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNSDRTQRGPSVLNLLEDFGLVYVIGMRKEKVENEYLT 
           ______________________________________________________________________________________________________105_______________ 

           ______129____________________________________________________________________________________________224________________ 
 3dsc(A) : SERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALGHIHKRYETSYSGSPVVYPGSLERWDFGDYEVRYEW 
         :                                                                                                                          
 3dsd(A) : SERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALGHIHKRYETSYSGSPVVYPGSLERWDFGDYEVRYEW 
           ______129____________________________________________________________________________________________224________________ 

           _____________256_________268_________________________________________________________________                            
 3dsc(A) : DGIKFKERYGVNKGFYIVEDFKPRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKIDTWRI                            
         :                                                                                                                          
 3dsd(A) : DGIKFKERYGVNKGFYIVEDFKPRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKIDTWRI                            
           _____________256_________268_________________________________________________________________                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.6
Translation
(A)
0.0
Closure
(%)
48.3
Bending Residues
( green )
  105 - 110
  129 - 131
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
7.7
Translation
(A)
0.1
Closure
(%)
20.6
Bending Residues
( green )
  224 - 229
  256 - 257
  268 - 272
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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