DNA Mismatch Repair Protein Muts

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Mismatch Repair Protein Muts
  Conformer 1
(PDB)
1fw6 (A)
  Conformer 2
(PDB)
1fw6 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 556 1.1   91 - 91   118 - 226   229 - 405   408 - 410   418 - 420   484 - 759
2 105 0.74   5 - 90   92 - 117   227 - 228
3 71 0.91   406 - 407   411 - 417   421 - 483

Sequence


           ____________________________________________________________________________________90________________________117_______ 
 1fw6(A) : EGlKGEGPGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPaGIPLRAFEAYAERLLKgFRLAVADQVEPAEEAEGLVRREVTQLLTPGTLLQE 
         :                                                                                                                          
 1fw6(B) : EGlKGEGPGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPaGIPLRAFEAYAERLLKgFRLAVADQVEP-------vRREVTQLLTPGTLLQE 
           __________________________________________________________________________________1090_______________________1117_______ 

           __________________________________________________________________________________________________226___________________ 
 1fw6(A) : SLLPREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLLAPELLENGAFLDEFRKRFPVlSEAPFEPEGEGPLALRRARGALLAYAQRTQGGALSLQPFRFYD 
         :                                                                                                                          
 1fw6(B) : SLLPREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLLAPELLENGAFLDEFRKRFPVlSEAPFEPEGEGPLALRRARGALLAYAQRTQGGALSLQPFRFYD 
           _________________________________________________________________________________________________1226___________________ 

           ________________________________________________________________________________________________________________________ 
 1fw6(A) : PGAFrLPEATLRALEVFEPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQILPELRALL 
         :                                                                                                                          
 1fw6(B) : PGAFrLPEATLRALEVFEPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQILPELRALL 
           ________________________________________________________________________________________________________________________ 

           ____________________________________405__410____417______________________________________________________________483____ 
 1fw6(A) : GEEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEkEKERE 
         :                                                                                                                          
 1fw6(B) : GEEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEkEKERE 
           ___________________________________1405_1410___1417_____________________________________________________________1483____ 

           ________________________________________________________________________________________________________________________ 
 1fw6(A) : VYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQIRAGRHPVVERRTEFVPNDLEaHELVLITGPNaGKSTFLRQTALIALLAQVGSFV 
         :                                                                                                                          
 1fw6(B) : VYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQIRAGRHPVVERRTEFVPNDLEaHELVLITGPNaGKSTFLRQTALIALLAQVGSFV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1fw6(A) : PAEEAHLPLFDGIYTRIGAgKSTFvEeEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALGLPRLKNLHVAAREEAGGLVFYHQVLPGPASKSY 
         :                                                                                                                          
 1fw6(B) : PAEEAHLPLFDGIYTRIGAgKSTFvEeEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALGLPRLKNLHVAAREEAGGLVFYHQVLPGPASKSY 
           ________________________________________________________________________________________________________________________ 

           __________________________                                                                                               
 1fw6(A) : GVEVAAaGLPKEVVARARALLQAaAR                                                                                               
         :                                                                                                                          
 1fw6(B) : GVEVAAaGLPKEVVARARALLQA***                                                                                               
           __________________________                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.4
Translation
(A)
0.7
Closure
(%)
6.5
Bending Residues
( green )
  90 - 92
  117 - 118
  226 - 229
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
10.3
Translation
(A)
-1.3
Closure
(%)
54.7
Bending Residues
( green )
  405 - 408
  410 - 411
  417 - 418
  420 - 421
  483 - 484
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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