DNA Mismatch Repair Protein Muts

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Mismatch Repair Protein Muts
  Conformer 1
(PDB)
1e3m (A)
  Conformer 2
(PDB)
1e3m (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 633 1.94   116 - 444   454 - 454   464 - 474   477 - 798
2 74 0.56   17 - 115
3 20 0.54   445 - 453   455 - 463   475 - 476

Sequence


           __________________________________________________________________________________________________________114___________ 
 1e3m(A) : SAIENFDAHTPqQYLRLKAQHPEILLFYRgDFYELFYDDAKRASQLLDISLTKRGASAGEPIPaGIPYHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGTISDEALL 
         :                                                                                                                          
 1e3m(B) : ***********QQYLRLKAQHPEILLFYRgDFYELFYDDAKRASQLLDISLT----------paGIPYHAVENYLAKLVNQGESVAICE-------------rKVVRIVTPGTISDEALL 
           __________________________________________________________________________________________________________114___________ 

           ________________________________________________________________________________________________________________________ 
 1e3m(A) : QERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETaAELQRTNPAELLYAEDFAEsLIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCLLQYAKDT 
         :                                                                                                                          
 1e3m(B) : QERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRETaAELQRTNPAELLYAEDFAEsLIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCLLQYAKDT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1e3m(A) : QRTTLPHIRSITeREQDSIIdAATRRNLEITQNLAGGAENTLASVLDCTVTPgSRlKRWLHpVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLERILARLALRTARPRDLARrHAFQ 
         :                                                                                                                          
 1e3m(B) : QRTTLPHIRSITeREQDSIIdAATRRNLEITQNLAGGAENTLASVLDCTVTPgSRlKRWLHpVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLERILARLALRTARPRDLARrHAFQ 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________437_____________453_______463________474____________________ 
 1e3m(A) : QLPELRAQLETVDSAPVQALREKgEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYrRQTL 
         :                                                                                                                          
 1e3m(B) : QLPELRAQLETVDSAPVQALREKgEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYrRQTL 
           ____________________________________________________________437_____________453_______463________474____________________ 

           ________________________________________________________________________________________________________________________ 
 1e3m(A) : KNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRlIITGPN 
         :                                                                                                                          
 1e3m(B) : KNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRlIITGPN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1e3m(A) : gGKSTYrQTALIALaYIGSYVPAQKVEIGPIDRIFTRVG-fvEtETANILHNATEYSLVLdEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKeGVANVHLDALEHG 
         :                                                                                                                          
 1e3m(B) : gGKSTYrQTALIALaYIGSYVPAQKVEIGPIDRIFTRVGtFvEtETANILHNATEYSLVLdEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKeGVANVHLDALEHG 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________                                                                           
 1e3m(A) : DTIAFhSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESIS                                                                           
         :                                                                                                                          
 1e3m(B) : DTIAFhSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESIS                                                                           
           ______________________________________________                                                                           

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.9
Translation
(A)
-1.2
Closure
(%)
83.2
Bending Residues
( green )
  114 - 116
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
16.0
Translation
(A)
-0.4
Closure
(%)
90.1
Bending Residues
( green )
  437 - 446
  453 - 455
  463 - 465
  474 - 477
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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